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Published Papers and Poster Presentations

For a more complete understanding of ProMOL and its functions, uses, and developments, please view the documents below.

Contents:

    Published Works:
  1. Hanson et al: Estimation of Protein Function Using Template-Based Alignment of Enzyme Active Sites. BMC Bioinformatics 2014 15:87.
  2. McKay et al: Annotation of proteins of unknown function: initial enzyme results. Journal of Structural and Functional Genomics 2015 16:43-54.
  3. Osipovitch et al: Automated protein motif generation in the structure-based protein function prediction tool ProMOL. Journal of Structural and Functional Genomics 2015 16:101-111.
    
    Poster Presentations:
  1. Mikhail Osipovitch, Paul A. Craig, Herbert J. Bernstein: Automated Protein Structural Motif Generation in ProMOL. 2013.
  2. Gregory Dodge, E. Nicole Arroyo, Herbert J. Bernstein, Paul A. Craig: Development and Testing of A systematic Approach for Computational Enzyme Function Determination. 2013.
  3. Talia McKay, Kaitlin Hart, Alison Horn, Weinishet Tedla-Boyd, Herbert J. Bernstein, Paul A. Craig: Protein Function Prediction Using ProMOL and PyMOL. 2014.
  4. Venkata Aditya Kovuri, Paul A. Craig, Herbert J. Bernstein: Recognition of Metal Ions Using ProMOL to Improve Protein Function. 2014.
  5. Paul A. Craig, Herbert J. Bernstein: Role of Undergraduate Biochemistry Education in Protein Function Assignment. 2014.
  6. Kaitlin Hart, Alison Horn, Gregory Dodge, Herbert J. Bernstein, Paul A. Craig: The Biochemical Characterization of the Protein Data Bank Structure 4EZI by In Silico and In Vitro Quantitative Methods. 2014.
  7. Shariq Madha,* Mitchell Lambrecht,* Jeffrey L. Mills, Herbert J. Bernstein, and Paul A. Craig. Refinement of the ProMOL Algorithm and Determination of Function Based on Homology. ASBMB Annual Meeting, San Diego, CA, April 2-6, 2016.
  8. Jeffrey L. Mills, Kaitlin Hart,* Emily Thurnherr,* Suzanne F. O’Handley, Herbert J. Bernstein, and Paul A. Craig. A Redesigned Undergraduate Biochemistry Lab. ASBMB Annual Meeting, San Diego, CA, April 2-6, 2016.
  9. Cameron D. Baker, Jeffrey L. Mills, Herbert J. Bernstein, and Paul A. Craig. Database for Storage and Rapid Retrieval of ProMOL Results. ASBMB Annual Meeting, San Diego, CA, April 2-6, 2016.
  10. Paul A. Craig, Jeffrey L. Mills, Colette Daubner, and Michael J. Pikaart. Combining molecular visualization with bench methods in a hypothesis-driven undergraduate biochemistry lab course. ASBMB Annual Meeting, San Diego, CA, April 2-6, 2016.
  11. Shariq Madha,* Venkata Aditya Kovuri, Michael Bryan, Paul Craig, and Herbert Bernstein. A Scoring Function for Motif Template Alignments with ProMOL. ASBMB Annual Meeting, Boston, MA, March 28 - April 1, 2015.
  12. Kostandina Bardhi,* Keti Bardhi,* Paul Craig, and Herbert Bernstein. Targeting the AKT pathway in glioma by using bioinformatics tools. ASBMB Annual Meeting, Boston, MA, March 28 - April 1, 2015.
  13. Venkata Kovuri, Michael Bryan, Herbert Bernstein, and Paul Craig. Improving function assignment for metalloenzymes through active site alignment using ProMOL/PyMOL. ASBMB Annual Meeting, Boston, MA, March 28 - April 1, 2015.
  14. Majied Albalwi, Herbert Bernstein, and Paul Craig. Using ProMol to Study Zinc Finger Motifs. ASBMB Annual Meeting, Boston, MA, March 28 - April 1, 2015.
  15. Michael Bryan, Venkata Kovuri, Paul Craig, and Herbert Bernstein. Distributed computing approach to in silico protein function prediction using ProMOL. ASBMB Annual Meeting, Boston, MA, March 28 - April 1, 2015.





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Subpages (1): Posters and Papers